NAME:     SOLpro
FUNCTION: predict protein solubility upon overexpression
NOTE:     assume that the path of PPVED is '/datadisk/PPVED-1.0'
================================================================

#step1: Change the current working directory to the path of PPVED
    cd /datadisk/PPVED-1.0

#step2: Download and decompress SOLpro
    cd software
    wget -c http://download.igb.uci.edu/solpro.tar.gz
    tar zxvf solpro.tar.gz

#step3: Install SOLpro
    install SSpro 4.0
        #when you installed DIpro 2.0, you had already completed the installation of SSpro 4.0
        #therefore, here, you can skip the installation of SSpro 4.0
    install DOMpro 1.0
        wget -c http://download.igb.uci.edu/dompro1.0.tar.gz
        tar zxvf dompro1.0.tar.gz
        cd dompro1.0
        open script 'configure.pl', and set the DOMpro path ($install_dir, line 17) and SSpro4 path ($pspro_dir, line 20) to their installation directories
            e.g. : $install_dir = "/datadisk/PPVED-1.0/software/dompro1.0/";
            e.g. : $pspro_dir = "/datadisk/PPVED-1.0/software/sspro4/";
        ./configure.pl
    install LibSVM
        cd ..
        wget -c https://www.csie.ntu.edu.tw/~cjlin/libsvm/libsvm-3.24.zip #Alternatively, you can also download from our site: wget -c http://www.ppved.org.cn/dependent/other_programs/libsvm-3.24.zip
        unzip libsvm-3.24.zip
        cd libsvm-3.24
        make
    install SOLpro
        cd ../solpro
        open script 'configure.pl', and set the SSpro4 path ($sspro_dir, line 21), DOMpro path ($dompro_dir, line 24) and SOLpro path ($solpro_dir, line 27) to their installation directories
            e.g. : $sspro_dir = "/datadisk/PPVED-1.0/software/sspro4/";
            e.g. : $dompro_dir = "/datadisk/PPVED-1.0/software/dompro1.0/";
            e.g. : $solpro_dir = "/datadisk/PPVED-1.0/software/solpro";
        cp ../libsvm-3.24/svm-scale bin
        cp ../libsvm-3.24/svm-predict bin
        cd scripts
        open script 'features1.c', and comment out its line 68, that is, add character // before line 68
        open script 'features2.c', and comment out its line 47, that is, add character // before line 47
        cd ..
        ./configure.pl

#step4: test SOLpro
    cd test
    cp ../../../library/lib*.so.? .
    cp ../../testdata/test.fa .
    cp ../../testdata/test.solpro .
    ../bin/predict_sol.sh test.fa test.output

    #results: the output file 'test.output' should be identical to the provided file 'test.solpro'.

    Congratulations, the installation is complete !